All pull requests

Pull requests

• Restore Pandas membership checks for string instance IDs

  #1280·sophiamaedler opened Oct 19, 2026·

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• Fix docs build: load scverse_misc.sphinx_ext before sphinx_autodoc_typehints

  #1278·LucaMarconato opened Oct 17, 2026Member·

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• Keep category colors in sync when filtering tables

  #1277·syahra712 opened Oct 16, 2026·

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• docs: clarify how coordinates stored in tables are treated

  #1274·jan-glx opened Oct 15, 2026Collaborator·

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• docs: fix outdated statements in the SpatialData class docstring

  #1273·jan-glx opened Oct 15, 2026Collaborator·

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• Fix transformation equality for mismatched axes

  #1269·yyli-leo opened Oct 7, 2026·

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• fix: resample multiscale labels with nearest neighbour in transform()

  #1267·Sizerta opened Oct 2, 2026·

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• fix: left join with no matching rows crashed queries on labels

  #1266·FarisHrvat opened Sep 29, 2026·

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• docs: queries return MultiPolygons whole

  #1265·FarisHrvat opened Sep 29, 2026·

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• fix: clear error when aggregating by labels without instances

  #1264·FarisHrvat opened Sep 29, 2026·

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• fix: skip tables without annotation metadata when filtering query results

  #1263·FarisHrvat opened Sep 29, 2026·

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• Removes redundant check-ast hook

  #1262·Tomaz-Vieira opened Sep 28, 2026Collaborator·

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• fix: aggregate images by multiscale labels

  #1261·Sizerta opened Sep 24, 2026·

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• build(deps): bump the actions-deps group across 1 directory with 6 updates

  dependenciesgithub_actions
  #1258·dependabot[bot] opened Sep 23, 2026Bot·

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• Require zarr 3.1.2 or newer

  #1257·Darlokt opened Sep 22, 2026·

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• Validate element-type selection when reading Zarr stores

  #1253·kayoderaheem opened Sep 18, 2026·

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• Respect value_key when aggregating image channels

  #1252·Qinzi27 opened Sep 17, 2026·

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• Fixes basic typing issues in rasterize.py

  #1247·Tomaz-Vieira opened Sep 11, 2026Collaborator·

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• build(deps): bump the pre-commit group across 1 directory with 4 updates

  dependenciespre_commit
  #1245·dependabot[bot] opened Sep 11, 2026Bot·

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• add markdown suffix for sphinx source backlinks

  #1200·jan-glx opened Sep 1, 2026Collaborator·

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• feat: add table_shard_size_bytes to control the zarr shard size of tables

  #1199·Tomatokeftes opened Sep 1, 2026Contributor·

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• [pre-commit.ci] pre-commit autoupdate

  #1198·pre-commit-ci[bot] opened Aug 31, 2026Bot·

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• test: document join scoping for a region absent from the query

  #1195·jan-glx opened Aug 28, 2026Collaborator·

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• fix: write OME channel labels as strings

  #1168·stanbot8 opened Jul 25, 2026Contributor·

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• fix: support raster labels above uint16

  #1167·stanbot8 opened Jul 24, 2026Contributor·

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