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@Ecogenomics

Australian Centre for Ecogenomics

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  1. GTDBTk GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Python 624 100

  2. CheckM CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Python 411 75

  3. gtdb-species-clusters gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Python 20 3

  4. BamM BamM Public archive

    Metagenomics-focused BAM file manipulation

    C 15 7

  5. GTDBNCBI GTDBNCBI Public

    The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for ar…

    Python 9 2

  6. Mannotator Mannotator Public archive

    Microbial annotation pipeline - in progress

    Perl 5 5

Repositories

Showing 10 of 38 repositories
  • GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Ecogenomics/GTDBTk's past year of commit activity
    Python 624 GPL-3.0 100 7 0 Updated Oct 20, 2026
  • gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Ecogenomics/gtdb-species-clusters's past year of commit activity
    Python 20 3 0 0 Updated Oct 19, 2026
  • GTDBNCBI Public

    The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for archaea and bacteria.

    Ecogenomics/GTDBNCBI's past year of commit activity
    Python 9 GPL-3.0 2 18 0 Updated Oct 13, 2026
  • gtdb-migration-tk Public

    Toolkit for updating the GTDB to the next release and test data

    Ecogenomics/gtdb-migration-tk's past year of commit activity
    Python 1 0 1 0 Updated Oct 10, 2026
  • gtdb.ecogenomic.org Public

    https://gtdb.ecogenomic.org/

    Ecogenomics/gtdb.ecogenomic.org's past year of commit activity
    Vue 2 1 11 1 Updated Sep 24, 2026
  • hatchet Public

    Tools used to split the GTDB-Tk reference tree into smaller sub trees

    Ecogenomics/hatchet's past year of commit activity
    Python 1 0 0 0 Updated Jul 17, 2026
  • gtdb-release-tk Public

    Toolkit for updating the GTDB to the next release and generating data files for the GTDB website.

    Ecogenomics/gtdb-release-tk's past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Jul 6, 2026
  • gTranslate Public

    Tool for identifying the genetic translation table used by prokaryotic organisms

    Ecogenomics/gTranslate's past year of commit activity
    4 0 0 0 Updated Apr 20, 2026
  • gtdb-lib Public

    An abstraction of objects, files, and third-party tools used by the GTDB. Not intended for public use.

    Ecogenomics/gtdb-lib's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 11, 2026
  • CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Ecogenomics/CheckM's past year of commit activity
    Python 411 GPL-3.0 75 8 0 Updated Mar 2, 2026
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